The role of RNA folding free energy in the evolution of the polymerase genes of the influenza A virus
Identifieur interne : 001027 ( Main/Exploration ); précédent : 001026; suivant : 001028The role of RNA folding free energy in the evolution of the polymerase genes of the influenza A virus
Auteurs : Rachel Brower-Sinning [États-Unis] ; Donald M. Carter [États-Unis] ; Corey J. Crevar [États-Unis] ; Elodie Ghedin [États-Unis] ; Ted M. Ross [États-Unis] ; Panayiotis V. Benos [États-Unis]Source :
- Genome Biology [ 1465-6906 ] ; 2009.
Descripteurs français
- KwdFr :
- ARN viral (), ARN viral (physiologie), Animaux, Conformation d'acide nucléique, Humains, Oiseaux, Protéines virales (génétique), RNA replicase (génétique), Réplication virale, Sous-type H1N1 du virus de la grippe A, Sous-type H2N2 du virus de la grippe A, Sous-type H3N2 du virus de la grippe A, Sous-type H5N1 du virus de la grippe A, Stabilité de l'ARN, Température, Thermodynamique, Virus de la grippe A (enzymologie), Virus de la grippe A (génétique), Évolution moléculaire.
- MESH :
- enzymologie : Virus de la grippe A.
- génétique : Protéines virales, RNA replicase, Virus de la grippe A.
- physiologie : ARN viral.
- ARN viral, Animaux, Conformation d'acide nucléique, Humains, Oiseaux, Réplication virale, Sous-type H1N1 du virus de la grippe A, Sous-type H2N2 du virus de la grippe A, Sous-type H3N2 du virus de la grippe A, Sous-type H5N1 du virus de la grippe A, Stabilité de l'ARN, Température, Thermodynamique, Évolution moléculaire.
English descriptors
- KwdEn :
- Animals, Birds, Evolution, Molecular, Humans, Influenza A Virus, H1N1 Subtype, Influenza A Virus, H2N2 Subtype, Influenza A Virus, H3N2 Subtype, Influenza A Virus, H5N1 Subtype, Influenza A virus (enzymology), Influenza A virus (genetics), Nucleic Acid Conformation, RNA Replicase (genetics), RNA Stability, RNA, Viral (chemistry), RNA, Viral (physiology), Temperature, Thermodynamics, Viral Proteins (genetics), Virus Replication.
- MESH :
- chemical , chemistry : RNA, Viral.
- chemical , genetics : RNA Replicase, Viral Proteins.
- enzymology : Influenza A virus.
- genetics : Influenza A virus.
- chemical , physiology : RNA, Viral.
- Animals, Birds, Evolution, Molecular, Humans, Influenza A Virus, H1N1 Subtype, Influenza A Virus, H2N2 Subtype, Influenza A Virus, H3N2 Subtype, Influenza A Virus, H5N1 Subtype, Nucleic Acid Conformation, RNA Stability, Temperature, Thermodynamics, Virus Replication.
Abstract
RNA folding free energy is important for the evolution and host-adaptation of the influenza virus. Human virus polymerase genes are shown to have substantially higher folding free energy values than their avian counterparts.
Url:
DOI: 10.1186/gb-2009-10-2-r18
PubMed: 19216739
PubMed Central: 2688270
Affiliations:
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Le document en format XML
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Benos</name><affiliation wicri:level="4"><nlm:aff id="I1">Department of Computational Biology, School of Medicine, University of Pittsburgh, Fifth Avenue, Pittsburgh, PA 15260, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Computational Biology, School of Medicine, University of Pittsburgh, Fifth Avenue, Pittsburgh, PA 15260</wicri:regionArea><placeName><region type="state">Pennsylvanie</region><settlement type="city">Pittsburgh</settlement></placeName><orgName type="university">Université de Pittsburgh</orgName></affiliation><affiliation wicri:level="4"><nlm:aff id="I5">Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, Meyran Avenue, Pittsburgh, PA 15260, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, Meyran Avenue, Pittsburgh, PA 15260</wicri:regionArea><placeName><region type="state">Pennsylvanie</region><settlement type="city">Pittsburgh</settlement></placeName><orgName type="university">Université de Pittsburgh</orgName></affiliation></author></analytic><series><title level="j">Genome Biology</title><idno type="ISSN">1465-6906</idno><idno type="eISSN">1465-6914</idno><imprint><date when="2009">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Birds</term><term>Evolution, Molecular</term><term>Humans</term><term>Influenza A Virus, H1N1 Subtype</term><term>Influenza A Virus, H2N2 Subtype</term><term>Influenza A Virus, H3N2 Subtype</term><term>Influenza A Virus, H5N1 Subtype</term><term>Influenza A virus (enzymology)</term><term>Influenza A virus (genetics)</term><term>Nucleic Acid Conformation</term><term>RNA Replicase (genetics)</term><term>RNA Stability</term><term>RNA, Viral (chemistry)</term><term>RNA, Viral (physiology)</term><term>Temperature</term><term>Thermodynamics</term><term>Viral Proteins (genetics)</term><term>Virus Replication</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral ()</term><term>ARN viral (physiologie)</term><term>Animaux</term><term>Conformation d'acide nucléique</term><term>Humains</term><term>Oiseaux</term><term>Protéines virales (génétique)</term><term>RNA replicase (génétique)</term><term>Réplication virale</term><term>Sous-type H1N1 du virus de la grippe A</term><term>Sous-type H2N2 du virus de la grippe A</term><term>Sous-type H3N2 du virus de la grippe A</term><term>Sous-type H5N1 du virus de la grippe A</term><term>Stabilité de l'ARN</term><term>Température</term><term>Thermodynamique</term><term>Virus de la grippe A (enzymologie)</term><term>Virus de la grippe A (génétique)</term><term>Évolution moléculaire</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA Replicase</term><term>Viral Proteins</term></keywords><keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr"><term>Virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Protéines virales</term><term>RNA replicase</term><term>Virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>ARN viral</term></keywords><keywords scheme="MESH" type="chemical" qualifier="physiology" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Birds</term><term>Evolution, Molecular</term><term>Humans</term><term>Influenza A Virus, H1N1 Subtype</term><term>Influenza A Virus, H2N2 Subtype</term><term>Influenza A Virus, H3N2 Subtype</term><term>Influenza A Virus, H5N1 Subtype</term><term>Nucleic Acid Conformation</term><term>RNA Stability</term><term>Temperature</term><term>Thermodynamics</term><term>Virus Replication</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>ARN viral</term><term>Animaux</term><term>Conformation d'acide nucléique</term><term>Humains</term><term>Oiseaux</term><term>Réplication virale</term><term>Sous-type H1N1 du virus de la grippe A</term><term>Sous-type H2N2 du virus de la grippe A</term><term>Sous-type H3N2 du virus de la grippe A</term><term>Sous-type H5N1 du virus de la grippe A</term><term>Stabilité de l'ARN</term><term>Température</term><term>Thermodynamique</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>RNA folding free energy is important for the evolution and host-adaptation of the influenza virus. Human virus polymerase genes are shown to have substantially higher folding free energy values than their avian counterparts.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>États-Unis</li></country><region><li>Pennsylvanie</li></region><settlement><li>Pittsburgh</li></settlement><orgName><li>Université de Pittsburgh</li></orgName></list><tree><country name="États-Unis"><region name="Pennsylvanie"><name sortKey="Brower Sinning, Rachel" sort="Brower Sinning, Rachel" uniqKey="Brower Sinning R" first="Rachel" last="Brower-Sinning">Rachel Brower-Sinning</name></region><name sortKey="Benos, Panayiotis V" sort="Benos, Panayiotis V" uniqKey="Benos P" first="Panayiotis V" last="Benos">Panayiotis V. 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